have you ever considered reinstalling windows? maybe you messed up some important files somewhere. it has been running for two years. kinda was in the same boat after i installed a piece of software, when my system would sleep, the monitors would never come back on. I even went so far as to stop it from sleeping (always on) and when the screen would blank, all the icons would shift to the right side of the middle monitor. weird.
reinstalling windows 8.1 worked and fixed everything. just an idea if hardware leads you nowhere.
-hax0rmort
MOBO - ASUS ROG Crosshair V Formula-Z
CPU - AMD FX-9370
RAM - AMD Radeon R9 Gamer Series 16GB (2 x 8GB) 2400 MHz
SSD1 - Samsung 840 EVO 250GB // Boot
SSD2 - Samsung 840 EVO 250GB // Game
GPU1 - ASUS Radeon R9 290X
GPU2 - ASUS Radeon R9 290X
COOLER - Corsair H100i AIO Liquid Cooler
PSU - Corsair RM Series 1000W Gold PSU
AUDIO - Creative Sound Blaster Z
CASE - NZXT H440 Red/Black
KEYBOARD - Corsair K95 RGB
MOUSE - SteelSeries Sensei
HEADSET - Logitech G430