It seems to just be an "unavoidable" issue when using onboard audio - sometimes your chipset gets too busy and feeds some noise into the audio. Maybe the beefier onboard audio solutions on higher-end mobos tends to conceal the problem better. You probably get some audio stutter whenever "HDD LED" is lit.
Not too much you can do about it with a laptop mobo, except perhaps use an external audio device.
And some motherboards are "noisier" than others, the audio codec can apparently be just as variable and quirky as any other piece of silicon. I haven't done any proper comparisons with measuring instruments but I have definitely noticed differences on a few side-by-side comparisons between "identical" platforms. Also note that Realtek chips contain built-in DRM features, I'm not sure how (or even if) this audio DRM is activated but if it is then (as always) it will impose extra layers of complexity which will limit performance or quality in peak-demand situations.
Again, dedicated audio hardware (which has it's own filters and buffers and stuff) can mitigate a lot of audio problems.
Intel CPUs have a dedicated HD Audio "channel" serviced by the chipset (Intel PCH and chipset add-on Realtek audio part connected downstream to it). GPU cards communicate with the CPU to fetch audio signals, and use their own drivers to translate it, because they can carry audio through their HDMI or DP outputs. You don't strictly need to install those software components if you're not using those hardware functions, although their horrible driver packages might force it all onto you anyhow. Clean audio can be disrupted or deprioritized when the CPU-to-PCH (DMI bus) bandwidth or the CPU-to-GPU (PCIe3 bus) bandwidth gets saturated with other data.
If it's only a mild annoyance then you'll just have to be mildly annoyed, lol. If it's a major annoyance then you won't regret buying decent headphones (basically anything $100+ which isn't Skullcandy or Beats by Dre) and a decent external audio device (like an O2+ODAC or a FiiO E10K) - the added bonus is that these can be "installed" without any software/drivers at all on any kind of machine which has a USB port.
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