Not sure what you mean, but the NF200 is a PCIe2.0 splitter. Splits the card side for 2 or 3 cards all at 16x, floods the cpu side using fifo 8x. I think. So you get full utilization of the CPU side shared between all slots and 16x between cards which is where most of the work is done.
With PCIe3 you get all buses 16x to the CPU, but what I am talking about is the improved latency you will also get from the CPU to the cards and back. The bridge chip might be OK for some of this I am just assuming what comes next will be better for that latency as well, time will tell.
PCI-E 3.0 is backwards compatible with 2.0, not sure whether that means native will always have some sort of bridge or gate, but everything will work with everything. I am not going to read much more on 3 until next year, so am not really sure, just guessing based on limited knowledge.