Assuming you have installed the water blocks correctly and the cards are seated correctly into the pcie slots you have the pcie lane switches on the motherboard to disable/enable pcie slots to test each card one at a time without removing them, turn off the slot that the second card is in to test the top card, then turn off the top card and move the monitor cable to the second card to test it, unlikely that a pcie slot dies, more likely card not fully seated, cables not fully seated, memory modules not seated, or CPU block mount uneven or too tight
I have had D6 code with a corrupted bios flash before, did you also recently update the bios? try booting to the second bios
Sometimes it is best to only enable one video card, install the driver, then turn system off, enable the second card and boot, let the OS detect and install driver for second card, then turn system off and install the sli bridge and boot again
Windows 10 or 7? you mentioned Windows 10 but your specs list Windows 7