I do have the Aura software installed and tried to calibrate the LED strip through that and it would not show red. I also selected Red in the Aura software for the LED strip and it would not display red.

Well, Ive now tried nearly everything Ive seen people suggest to get Aura Sync to show my MB and the strips attached to my RGB headers, but they still wont show up. Only my Strix gpu does. Only thing I havent tried yet is resetting my Cmos. But I did flash the newest bios to my Alpha a couple weeks ago,reset everything to defaults and redid all my OC and UEFI settings and nothing new showed up in the Aura software after that ,so Idk if resetting my cmos would do anything for me at this point. For now. My motherboard's Rgb leds and header strips seem to be stuck on exactly how I had them set with the old Aura software from back when the Alpha was released. I may end up having to go back to the Asus site and download that old program and see if it gives me control of the board once again..