Firstly if you have the 3.1 board the first thing you should know is that they are different and each board has its own Bios revisions.
The highest revision for the 3.1 board is 1502.
Do not goto the wrong support page at Asus, goto the 3.1 support page and get drivers etc from there for the USB 3.1 board, DON'T flash the Bios with 1701 from the other board, its not meant for it if it is a 3.1 board and has 1701 on it then someone has flashed it to the wrong bios.
The 3.1 board comes with a 3.1 USB addon card, the other doesn't, make sure you know which one you have.
http://www.asus.com/uk/Motherboards/RAMPAGE_V_EXTREMEU31/HelpDesk_Download/Failing that I don't think your overclock/Memory kit is fully stable, and I wouldn't trust AIsuites overclocking as far as I could throw it, I tried it on mine just to see, and it wouldn't even post, some swear by it I'm not one of em.
Have a good read of both the installing 3000mhz memory guide and the overclocking Haswell-E, as they all relate to 5960x, so should give you ideas what to set your voltages at, as far as overclocking goes.
For the moment though I'd try running your system at stock CPU settings after some OCCT testing, if you still have issues you can try tweak the system agent voltage, I have the Kit above the one you have the 2800CL16 kit which is on the QVL list (if you look I think its the 2nd/3rd one down on the 2800Mhz list).
I've had a major struggle with this board getting things stable and all the kits I've used have been corsair, though the first 2 kits were 16GB 3300GHZ kits which weren't on the QVL list, so I got the 2800Mhz 32GB one which runs at 2800/3000Mhz XMP which was, after a couple of weeks trying to get the first two kits working the 3rd 32GB kit went in easier though it started 'loosing' Ram and not detecting it in the sockets properly.
Setting the CHA/CHB Dram boot voltage to 1.35v on both and tweaking the system agent voltage to 1.2v seemed to stop it and any memory errors.
For you I'd sugest you go read both the 3000mhz memory installation guide, which explains setting up your RAM, and the system agent voltage, and the Overclocking Haswell-E guide on here to get some pointers first. And if you do try to overclock yourself, disable Speedstep and Turbo in CPU Power management before you start and get a static overclock working.
The Guides will give you a very good idea what to put in as far as voltages go, though they will vary according to your CPU some, that also goes for having to tweak System Agent, if required and how much as that relates to the memory controller on the CPU.
Your problem might be solved by simply tweaking the system agent voltage by 0.01 steps till you find a good spot for your cpu, It could also be a case that your cpu voltages aren't quite right, and need tweaking.
Picking up OCCT (free off the net google it) is not a bad idea and run the CPU test with a Large Data set, it will usually find problems fairly quickly, leave it going for about 1-3hrs to be sure. (I'd start with OCCT first at your current settings see what happens.)
Running HCI memtest and entering 2048 then run 14 copys of it at the same time all with 2048 entered in and run at least 100% coverage to test your ram is also a good idea.
If your Ram spits out ANY errors then you may need to tweak your system agent voltage, providing you have setup the Ram voltages for your kit in both the Boot and Eventual voltages in the Dram timings section, personally I'd enter them manually rather than trusting XMP to do it for you, that's for both your timings, and voltages.
Just go with the Kits recommended XMP timings for the frequency your going for, it tells you them on the XMP drop down and the Dram voltage.
One note though don't run the LINPACK test with the AVX option in OCCT, it generates a lot of heat, which is its purpose, that being to find problems on your overclock & instability caused by heat.
As I've no idea what voltage AISuite has set on your CPU, and might cause your CPU to get hot, though OCCT is verygood as it has a default 85deg cut out and will terminate any test if it detects your CPU going that high temp wise, one reason I recommend it and its simple to use and unlike other programs reports voltages etc accurately.
Also the Linpack test isn't the best one for finding certain problems the CPU test is the one you want.
Read both those guides and run OCCT CPU test then come back and tell how you faired easier to start from there I think.
If it fails and your system pukes then next step I'd would say is trying to get your Memory kit stable at Stock CPU settings and try testing again, it will tell you if you need to tweak the system agent some or not etc, the guide suggests overclocking your cpu first, then trying to get XMP working later.
Personally I've found it the other way round get your kit stable first and tweak system agent etc till its stable then try overclock the cpu, but everyone will jump in now and say I'm wrong.
🙂But frankly everything will go tits up if your memory kits not stable, from dropping sticks out of bios to duimping HD's and SSD's out of bios all which I had on my build. Fun and games huh?
But first thing is first go read those guides and run OCCT CPU test for a few hours, then come back.